Ajay and Shabana bring Wasim back to india. However, Shabana fights with him and knocks him unconscious. Their plan to capture Wasim goes awry when he finds out that Shabana is an undercover agent. Ajay and Shabana Khan ( Taapsee Pannu) travel to Nepal pretending to be husband and wife. The agency is able to retrieve the remains of Javed's laptop and find a name from the hard-drive: Wasim Khan(Sushant Singh), a logistics planner for the terrorist groups living in Nepal under the alias Abdul Haq. However, things go haywire when all the officers except Ajay get killed along with Javed after the latter triggers a suicide explosion. Ajay manages to get information on Javed after torturing Taufiq and raids Javed's hideout.
A team of ATS officers, led by Ajay, is dispatched to interrogate Taufiq ( Jameel Khan), an ISI agent posing as a local Muslim leader. The Indian agencies are alerted to Javed's arrival. Soon after, Bilal escapes from Police custody and flees the country. For this purpose, he assigns another terrorist Javed Ali Khan who arrives in Mumbai via Dubai. He plans an escape plan for Bilal Khan ( Kay Kay Menon), a dangerous terrorist lodged in a jail in Mumbai. Pakistan-based terrorist mastermind, Maulana Mohammed Abdul Rehman( Rasheed Naz), is causing trouble near the India-Pakistan border.
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Ajay learns that this was only the first of a series of massive attacks that the terrorists had planned. Jamaal tells Ajay about a plot to carry out a bomb blast in a Delhi mall, which he and Jai ( Rana Daggubati) prevent. Ajay threatens to kill his family unless he gives him the information about a terror attack plan. While attempting to rescue a fellow secret agent in Turkey, Ajay Singh Rajput ( Akshay Kumar) captures a former colleague-turned-traitor, Jamal (Karan Anand). Formed in response to the 26/11 attacks, their job is to find and eliminate terrorists planning attacks in India. The plot follows the last mission of Baby, a temporary task force headed by Feroz Ali Khan ( Danny Denzongpa).